Personally, I believe The Kid is being used as a figure head, because, let's be honest, he's a noob, he's greener than the code of the Matrix. He is one of the first documented humans to wake up without a pill, he trans-substantiated.
Neo denies being responcible for this, he's the one who got into contact with the kid, but he didn't pull him out, the kid did it all by himself. The Kid suffers from Hero Worship, a worship that goes on even after his Hero is dead.
The Kid later becomes a hero in his own right by opening the bay doors and allowing the hammer to stop the first wave of the machine attack.
So now the people of Zion have declared him a Hero, which makes makes his opinion (a dangerous thing in the wrong hands) more important to the masses. Of course, he thinks Neo is a god, or a savior, or something along that line. Neo denies this for the most part, but, of course, people think he's just being modest.
I think the Kid got into more than he could handle, However, Shimada is something interesting. She seems to know what she's doing, also interesting to note that she is one of if not THE only EPN member to not dress like Trinity or Neo.