Just in case people missed it in the all too fast moving Ask A Dev Thread i thought i'd give this very interesting response it's own thread for review/discussion 
Insight Into The Future
2 posts · 2007-02-04 06:57:00 to 2007-02-04 07:25:00
I wonder if these "changes to the universe, past and present" involve the idea Rarebit posted a while back in the "Ask the Dev" thread regarding his theory (after watching the trilogy again) of (IIRC) Neo not really being the Anamoly, but rather was rather meant to fight and stop Smith. I'd have to search through the thread to find it, but then again, the Search function isn't great here.