The event where the security guard "killed" Neo most likely happened before the Redpill Rescue level, but after the first movie. Bluepills don't have any memories of what happens during an Agent takeover.
The bluepill that Smith inhabited when Neo destroyed him from the inside at the end of the first movie is most likely dead.
- An MxO live event transcript website:
"Archival Science in a Post-War Simulation".
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"Logging Tips for New People and Veterans Alike".
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"Submit Your Logs".
"Archival Science in a Post-War Simulation".
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"Logging Tips for New People and Veterans Alike".
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"Submit Your Logs".